CDS

Accession Number TCMCG057C24700
gbkey CDS
Protein Id XP_018493564.1
Location complement(join(14088981..14089214,14089313..14089960,14090032..14090334,14090431..14090488,14090571..14090714,14090794..14091050,14091132..14091341,14091430..14091603,14091691..14091758,14091847..14091905,14091990..14092065,14092137..14092242,14092333..14092442,14092646..14092810,14092909..14092994,14093082..14093146,14093236..14093283,14093734..14093853,14094020..14094095,14094177..14094202))
Gene LOC108863588
GeneID 108863588
Organism Raphanus sativus

Protein

Length 1010aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018638062.1
Definition PREDICTED: DNA mismatch repair protein MSH1, mitochondrial isoform X2 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category L
Description DNA mismatch repair protein MSH1
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE -
KEGG_ko -
EC -
KEGG_Pathway -
GOs GO:0000002        [VIEW IN EMBL-EBI]
GO:0000217        [VIEW IN EMBL-EBI]
GO:0000404        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003684        [VIEW IN EMBL-EBI]
GO:0003690        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005739        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006298        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007005        [VIEW IN EMBL-EBI]
GO:0008094        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009266        [VIEW IN EMBL-EBI]
GO:0009408        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009579        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0030983        [VIEW IN EMBL-EBI]
GO:0032042        [VIEW IN EMBL-EBI]
GO:0032135        [VIEW IN EMBL-EBI]
GO:0032300        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034357        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0042651        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043570        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044436        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990391        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTTTAAAGTCTCATATTTTAAGTTTCTAAAAGACGGGAATCTCAACTGGGAGATGTTGCAGTTTAAGTCAAGGTTTCCACGTGAAGTTTTGCTCTGCAGAGTTGGAGATTTCTATGAGGCCATTGGGATAGATGCATGTATACTCGTTGAGTATGCTGGTCTAAATCCGTTTGGTGGTCTTCGTTCAGATAGTGCTCCAAAGGCTGGTTGCCCAGTTGTGAATCTTCGACAGACTTTGGATGACTTAACACGCAACGGTTATTCAGTGTGTATTGTGGAGGAAGTTCAGGGGCCAACACCAGCTCGTTCTCGTAAAGGTCGATTCATTTCAGGGCATGCACATCCAGGAAGTCCTTATGTATATGGGCTTGTTGGTGTGGACCACGATCTTGACTTTCCGGAGCCTATGCCGGTCGTTGGGATATCTCGTTCAGCAAGGGGGTATTGCATGATATCTATCTTCGAAACTATGAAAGCATATTCACTAGATGATGGTCTAACAGAGGAAGCACTAGTCACCAAGCTCCGCACACGTCGCTGTCATCATCTTTTCTTACATGCATCATTGAGGAACAATGCATCAGGGACATGCCGGTGGGGAGAGTTTGGCGAAGGAGGTCTACTCTGGGGAGAATGCAGTGGCAGGAATTTTGAGTGGTTTGAAGGAGATGCTCTTACCGAGCTCTTATCGAAGGTCAAAGATGTTTATGGTCTTGATGATGAAGTTTCCTTTAGAAATGTCAACGTACCTTCAGAAAACCGGCCACGTCCATTGCATCTTGGAACGGCTACACAAATTGGTGCCTTGCCTACTGAAGGAATACCTTGTTTGTTGAAGGTGCTGCTTCCGCCTACGTGCAGTGGCCTGCCTTCTTTGTACGTCCGGGATCTTCTTCTAAACCCTCCTGCTTATGACATTGCTCTGAAAATCCAAGAAACTTGCAAGCTCATGAGCAAAATAACATGCTCAATTCCGGAGTTTACCTGTGTTTCATCTGCTAAGCTTGTGAAGCTTCTTGAACAACGGGAAGCCAACTACATTGAGTTCTGCCGGATAAAACATGTGCTTGATGAAGTATTACATATGCATAGACATCCTGAACTTGTGGAAATACTGAAGTTGTTGATGGAGCCTACTTGGGTAGCTACTGGTTTGAAGATTGACTTCGAAACTTTTGTCAACGAATGTCATTGGGCTTCTGACTCAATTGGTGAAATGATCTCTCTAGATGACGATGAAAGTGATCAGAACGTAAGTAAATGTGCTAATATCCCGAACGAGTTCTTTTATGATATGGAGTCTTCATGGCGTGGTCGCGTTAAGGGAATCCATATAGAAGAAGAAATCACACAAGTGGCAAAATCGGCTGAGGCTTTATCTTTAGCGGTAACTGAAGATTTTCACCCTATTATATCAAGAATCAAGGCCATGGCTGCATCACTTGGTGGTTCAAAGGGTGAAATTGCTTATGCAAAAGAACATGAGTCTGTTTGGTTCAAAGGGAAACGGTTTACCCCATCTGTGTGGGGTGGTACTGCTGGGGAAGAACAAATTAAACAGCTGAAACCTGCTTTTGACTCGAAAGGGAAAAAGGTTGGAGAAGAATGGTTTACGACCCAAAAGGTGGAAGATGCTTTGGTCAGATATCATGAAGCCACCGAGAACGCAAATGCCCGGGTCCTGGAACTGTTGAGGGAGTTATCTGCTAAACTGCAAACAAAAATAAACGTTCTCGTCTTTGCATCTATGCTTCTCGTCATTGCAAAAGCGTTATTTTCTCATGCTTGTGAAGGGAGAAGACGAAAATGGGTTTTCCCAACTCTTGTTGGATTCATTACAGATGAGGCCGCAAATCCATTAGATGGTGGTGTCACTCAAATGAAGCTGACTGGGCTGTCACCTTATTGGTTTGATGTAGCTTCTGGAACTGCTGTTCACAATACGGTCGACATGCAATCACTGTTTCTTCTAACCGGACCTAACGGTGGTGGTAAATCGAGTTTGCTCAGATCGATATGCGCAGCTGCTTTGCTTGGAATCTGTGGTTTTATGGTTCCAGCTGAATCAGCTTATATCCCTCACTTTGATTCCATCATGCTTCATATGAAATCTTATGACAGTCCTGTAGATGGGAAGAGTTCGTTTCAGGTAGAAATGTCGGAGATAAGATCTATTGTAAGCCAGGCTACTTCAAGAAGCCTAGTGCTCATAGATGAGATATGCAGAGGGACAGAGACGGCTAAAGGCACTTGTATTGCGGGTAGCGTGATCGAGAGTCTTGACGCAAGTGGTTGCTTGGGTATTGTATCTACACATCTCCATGGAATTTTTGATTTGCCTCTTACGGCTAAAAACGTCACCTATAAAGCAATGGGAGCACAGAATGTGGAAGGGCAGACAAAGCCAACTTGGAAATTGACAGACGGGGTTTGCAGAGAGAGTCTTGCGTTTGAAACAGCTAAGAGAGAAGGTGTCCCGGAGACAGTTATCCAAAGAGCCGAAGCTCTTTACCTCTCGGTTTATGCAAAAGAGGCGTCTTCTGGAGTTGTTAGACGAAACAACACCGAGACTTCATCGGACAATAGCCTTAAAATCAGCAAACCAGTCAGGTCTGAGAGAAGCTTAGAGAAGGACTTAGCAAAAGCTATCCTTAAAATCTGTGGGAAAAAGATGGTTGACCCTGTAGGTTTAGAATGTCTTTCAATAGGTGCTCGAGAGCTTCCACCTCCATCTACAGTTGGTTCATCATGTGTTTATGTGATGAAGAGACCCGATAAGAGGTTGTACATTGGACAGACGGATGATCTTGAAGGAAGAATACGTGCGCATAGGGCAAAGGAAGGACTGCAAGGGTCAAGTTTTCTATACCTTGTGGTGCAAGGTAAGAGTATAGCTTGTCAGCTAGAGACCCTTTTGATTAACCAGCTCCATGAGCAAGGCTACTCTCTAGCTAACTTAGCCGATGGAAAGCACCGCAATTTCGGGACGTCCTCAAGCTTGCCTACGTCAGATGTAGTCAGTATCTCATAG
Protein:  
MFKVSYFKFLKDGNLNWEMLQFKSRFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRSDSAPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTPARSRKGRFISGHAHPGSPYVYGLVGVDHDLDFPEPMPVVGISRSARGYCMISIFETMKAYSLDDGLTEEALVTKLRTRRCHHLFLHASLRNNASGTCRWGEFGEGGLLWGECSGRNFEWFEGDALTELLSKVKDVYGLDDEVSFRNVNVPSENRPRPLHLGTATQIGALPTEGIPCLLKVLLPPTCSGLPSLYVRDLLLNPPAYDIALKIQETCKLMSKITCSIPEFTCVSSAKLVKLLEQREANYIEFCRIKHVLDEVLHMHRHPELVEILKLLMEPTWVATGLKIDFETFVNECHWASDSIGEMISLDDDESDQNVSKCANIPNEFFYDMESSWRGRVKGIHIEEEITQVAKSAEALSLAVTEDFHPIISRIKAMAASLGGSKGEIAYAKEHESVWFKGKRFTPSVWGGTAGEEQIKQLKPAFDSKGKKVGEEWFTTQKVEDALVRYHEATENANARVLELLRELSAKLQTKINVLVFASMLLVIAKALFSHACEGRRRKWVFPTLVGFITDEAANPLDGGVTQMKLTGLSPYWFDVASGTAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESAYIPHFDSIMLHMKSYDSPVDGKSSFQVEMSEIRSIVSQATSRSLVLIDEICRGTETAKGTCIAGSVIESLDASGCLGIVSTHLHGIFDLPLTAKNVTYKAMGAQNVEGQTKPTWKLTDGVCRESLAFETAKREGVPETVIQRAEALYLSVYAKEASSGVVRRNNTETSSDNSLKISKPVRSERSLEKDLAKAILKICGKKMVDPVGLECLSIGARELPPPSTVGSSCVYVMKRPDKRLYIGQTDDLEGRIRAHRAKEGLQGSSFLYLVVQGKSIACQLETLLINQLHEQGYSLANLADGKHRNFGTSSSLPTSDVVSIS